SOFA API  6dc60b15
Open source framework for multi-physics simuation
sofa::component::engine::MeshSampler< DataTypes > Class Template Reference

#include <MeshSampler.h>

Inheritance diagram for sofa::component::engine::MeshSampler< DataTypes >:

Detailed Description

template<class DataTypes>
class sofa::component::engine::MeshSampler< DataTypes >

Select uniformly distributed points on a mesh based on Euclidean or Geodesic distance measure The method uses farthest point sampling followed by Lloyd (k-means) relaxation

Author
benjamin gilles

Public Attributes

Data< unsigned intnumber
 Sample number. More...
 
Data< VecCoordposition
 input positions More...
 
Data< SeqEdgesf_edges
 input edges for geodesic sampling More...
 
Data< VecCoordfixedPosition
 User defined sample positions. More...
 
Data< unsigned intmaxIter
 Max number of LLoyd iterations. More...
 
Data< VIoutputIndices
 selected point indices More...
 
Data< VecCoordoutputPosition
 selected point coordinates More...
 
- Public Attributes inherited from sofa::core::objectmodel::BaseObject
Data< boolf_listening
 if true, handle the events, otherwise ignore the events More...
 
- Public Attributes inherited from sofa::core::objectmodel::Base
helper::system::SofaOStream< helper::logging::Message::Warningserr
 
helper::system::SofaOStream< helper::logging::Message::Infosout
 
helper::system::SofaEndl< Basesendl
 runs the stream processing More...
 
Data< std::string > name
 Name of the object. More...
 
Data< boolf_printLog
 if true, emits extra messages at runtime. More...
 
Data< sofa::core::objectmodel::TagSetf_tags
 list of the subsets the objet belongs to More...
 
Data< sofa::defaulttype::BoundingBoxf_bbox
 this object bounding box More...
 
Data< sofa::core::objectmodel::ComponentStated_componentState
 the object state More...
 
DeprecatedAndRemoved m_componentstate
 
DeprecatedAndRemoved d_componentstate
 
std::string m_definitionSourceFileName {""}
 
int m_definitionSourceFilePos {-1}
 
std::string m_instanciationSourceFileName {""}
 
int m_instanciationSourceFilePos {-1}
 

Public Member Functions

 SOFA_CLASS (SOFA_TEMPLATE(MeshSampler, DataTypes), core::DataEngine)
 
 MeshSampler ()
 
 ~MeshSampler () override
 
void reinit () override
 Update method called when variables used in precomputation are modified. More...
 
void init () override
 Initialization method called at graph creation and modification, during top-down traversal. More...
 
void doUpdate () override
 Where you put your engine's impl. More...
 
void draw (const core::visual::VisualParams *vparams) override
 Render internal data of this object, for debugging purposes. More...
 
- Public Member Functions inherited from sofa::core::DataEngine
 SOFA_ABSTRACT_CLASS (DataEngine, core::objectmodel::BaseObject)
 
void update () final
 
void addInput (sofa::core::objectmodel::BaseData *data)
 Add a new input to this engine. More...
 
void addOutput (objectmodel::BaseData *n)
 Add a new output to this engine. More...
 
- Public Member Functions inherited from sofa::core::DataTrackerDDGNode
 DataTrackerDDGNode ()
 
void addInputs (std::initializer_list< sofa::core::objectmodel::BaseData * > datas)
 Create a DataCallback object associated with multiple Data fields. More...
 
void addOutputs (std::initializer_list< sofa::core::objectmodel::BaseData * > datas)
 
virtual void cleanDirty (const core::ExecParams *params=nullptr)
 
void updateAllInputsIfDirty ()
 
- Public Member Functions inherited from sofa::core::objectmodel::DDGNode
 DDGNode ()
 Constructor. More...
 
virtual ~DDGNode ()
 Destructor. Automatically remove remaining links. More...
 
void addInput (DDGNode *n)
 Add a new input to this node. More...
 
void delInput (DDGNode *n)
 Remove an input from this node. More...
 
void addOutput (DDGNode *n)
 Add a new output to this node. More...
 
void delOutput (DDGNode *n)
 Remove an output from this node. More...
 
const DDGLinkContainergetInputs ()
 Get the list of inputs for this DDGNode. More...
 
const DDGLinkContainergetOutputs ()
 Get the list of outputs for this DDGNode. More...
 
bool isDirty (const core::ExecParams *) const
 Returns true if the DDGNode needs to be updated. More...
 
bool isDirty () const
 
virtual void setDirtyValue (const core::ExecParams *) final
 Indicate the value needs to be updated. More...
 
virtual void setDirtyValue ()
 
virtual void setDirtyOutputs (const core::ExecParams *) final
 Indicate the outputs needs to be updated. This method must be called after changing the value of this node. More...
 
virtual void setDirtyOutputs ()
 
void cleanDirty (const core::ExecParams *)
 Set dirty flag to false. More...
 
void cleanDirty ()
 
virtual void notifyEndEdit (const core::ExecParams *) final
 Notify links that the DGNode has been modified. More...
 
virtual void notifyEndEdit ()
 
void updateIfDirty (const core::ExecParams *) const
 Utility method to call update if necessary. This method should be called before reading of writing the value of this node. More...
 
void updateIfDirty () const
 
- Public Member Functions inherited from sofa::core::objectmodel::BaseObject
 SOFA_CLASS (BaseObject, Base)
 
virtual void computeBBox (const core::ExecParams *, bool=false)
 
void setSrc (const std::string &v, std::vector< std::string > *attributeList=nullptr)
 Sets a source Object and parses it to collect dependent Data. More...
 
void setSrc (const std::string &v, const BaseObject *loader, std::vector< std::string > *attributeList=nullptr)
 
void * findLinkDestClass (const BaseClass *destType, const std::string &path, const BaseLink *link) override
 
virtual std::string getPathName () const override
 Return the full path name of this object. More...
 
virtual bool insertInNode (BaseNode *)
 
virtual bool removeInNode (BaseNode *)
 
template<class T >
T::SPtr searchLocal () const
 Local search of an object of the given type. More...
 
template<class T >
T::SPtr searchUp () const
 Upward search of an object of the given type, starting from the local context. More...
 
template<class T >
T::SPtr searchDown () const
 Downward search of an object of the given type, starting from the local context. More...
 
template<class T >
T::SPtr searchFromRoot () const
 
template<class T >
T::SPtr searchInParents () const
 
template<class T >
helper::vector< typename T::SPtr > searchAllLocal () const
 Local search of all objects of the given type. More...
 
template<class T >
helper::vector< typename T::SPtr > searchAllUp () const
 Upward search of all objects of the given type, starting from the local context. More...
 
template<class T >
helper::vector< typename T::SPtr > searchAllDown () const
 Downward search of all objects of the given type, starting from the local context. More...
 
template<class T >
helper::vector< typename T::SPtr > searchAllFromRoot () const
 Search of all objects of the given type, starting from the root. More...
 
template<class T >
helper::vector< typename T::SPtr > searchAllInParents () const
 
template<class T >
helper::vector< typename T::SPtr > searchAllLocal (const Tag &t) const
 Local search of all objects of the given type with a given Tag. More...
 
template<class T >
helper::vector< typename T::SPtr > searchAllUp (const Tag &t) const
 Upward search of all objects of the given type with a given Tag, starting from the local context. More...
 
template<class T >
helper::vector< typename T::SPtr > searchAllDown (const Tag &t) const
 Downward search of all objects of the given typee with a given Tag, starting from the local context. More...
 
template<class T >
helper::vector< typename T::SPtr > searchAllFromRoot (const Tag &t) const
 Search of all objects of the given typee with a given Tag, starting from the root. More...
 
template<class T >
helper::vector< typename T::SPtr > searchAllInParents (const Tag &t) const
 
template<class T >
helper::vector< typename T::SPtr > searchAllLocal (const TagSet &t) const
 Local search of all objects of the given type with a given TagSet. More...
 
template<class T >
helper::vector< typename T::SPtr > searchAllUp (const TagSet &t) const
 Upward search of all objects of the given type with a given TagSet, starting from the local context. More...
 
template<class T >
helper::vector< typename T::SPtr > searchAllDown (const TagSet &t) const
 Downward search of all objects of the given typee with a given TagSet, starting from the local context. More...
 
template<class T >
helper::vector< typename T::SPtr > searchAllFromRoot (const TagSet &t) const
 Search of all objects of the given typee with a given TagSet, starting from the root. More...
 
template<class T >
helper::vector< typename T::SPtr > searchAllInParents (const TagSet &t) const
 
SReal getTime () const
 Current time. More...
 
const BaseContextgetContext () const
 
BaseContextgetContext ()
 
const BaseObjectgetMaster () const
 
BaseObjectgetMaster ()
 
const VecSlavesgetSlaves () const
 
BaseObjectgetSlave (const std::string &name) const
 
virtual void addSlave (BaseObject::SPtr s)
 
virtual void removeSlave (BaseObject::SPtr s)
 
virtual void handleEvent (Event *)
 Handle an event. More...
 
virtual void handleTopologyChange ()
 
virtual void handleTopologyChange (core::topology::Topology *t)
 
void parse (BaseObjectDescription *arg) override
 Parse the given description to assign values to this object's fields and potentially other parameters. More...
 
virtual void bwdInit ()
 Initialization method called at graph creation and modification, during bottom-up traversal. More...
 
void updateInternal ()
 Update method called when variables (used to compute other internal variables) are modified. More...
 
virtual void storeResetState ()
 Save the initial state for later uses in reset() More...
 
virtual void reset ()
 Reset to initial state. More...
 
virtual void cleanup ()
 
- Public Member Functions inherited from sofa::core::objectmodel::Base
virtual const BaseClassgetClass () const
 
void addUpdateCallback (const std::string &name, std::initializer_list< BaseData * > inputs, std::function< sofa::core::objectmodel::ComponentState(const DataTracker &)> function, std::initializer_list< BaseData * > outputs)
 
void addOutputsToCallback (const std::string &name, std::initializer_list< BaseData * > outputs)
 
const std::string & getName () const
 Accessor to the object name. More...
 
void setName (const std::string &n)
 Set the name of this object. More...
 
void setName (const std::string &n, int counter)
 Set the name of this object, adding an integer counter. More...
 
virtual std::string getTypeName () const
 Get the type name of this object (i.e. class and template types) More...
 
virtual std::string getClassName () const
 Get the class name of this object. More...
 
virtual std::string getTemplateName () const
 Get the template type names (if any) used to instantiate this object. More...
 
virtual std::string getNameSpaceName () const
 Get the template type names (if any) used to instantiate this object. More...
 
void setDefinitionSourceFileName (const std::string &sourceFileName)
 Set the source filename (where the component is implemented) More...
 
const std::string & getDefinitionSourceFileName () const
 Get the source filename (where the component is implemented) More...
 
void setDefinitionSourceFilePos (const int)
 Set the source location (where the component is implemented) More...
 
int getDefinitionSourceFilePos () const
 Get the source location (where the component is implemented) More...
 
void setInstanciationSourceFileName (const std::string &sourceFileName)
 
const std::string & getInstanciationSourceFileName () const
 
void setInstanciationSourceFilePos (const int)
 
int getInstanciationSourceFilePos () const
 
const std::string getWarnings () const
 
const std::string getOutputs () const
 use getLoggedMessageAsString() or getLoggedMessage instead. More...
 
void clearWarnings ()
 use getLoggedMessageAsString() or getLoggedMessage instead. More...
 
void clearOutputs ()
 use clearLoggedMessages() instead More...
 
void processStream (std::ostream &out)
 use clearLoggedMessages() instead More...
 
void addMessage (const sofa::helper::logging::Message &m) const
 
size_t countLoggedMessages (sofa::helper::logging::Message::TypeSet t=sofa::helper::logging::Message::AnyTypes) const
 
const std::deque< sofa::helper::logging::Message > & getLoggedMessages () const
 
const std::string getLoggedMessagesAsString (sofa::helper::logging::Message::TypeSet t=sofa::helper::logging::Message::AnyTypes) const
 
void clearLoggedMessages () const
 
bool notMuted () const
 
bool IsInheritingFromBase ()
 
const sofa::core::objectmodel::TagSetgetTags () const
 Represents the subsets the object belongs to. More...
 
bool hasTag (Tag t) const
 Return true if the object belong to the given subset. More...
 
void addTag (Tag t)
 Add a subset qualification to the object. More...
 
void removeTag (Tag t)
 Remove a subset qualification to the object. More...
 
ComponentState getComponentState () const
 
bool isComponentStateValid () const
 
virtual bool parseField (const std::string &attribute, const std::string &value)
 Assign one field value (Data or Link) More...
 
virtual bool hasField (const std::string &attribute) const
 Check if a given Data field or Link exists. More...
 
void parseFields (const std::list< std::string > &str)
 Assign the field values stored in the given list of name + value pairs of strings. More...
 
virtual void parseFields (const std::map< std::string, std::string * > &str)
 Assign the field values stored in the given map of name -> value pairs. More...
 
void writeDatas (std::map< std::string, std::string * > &str)
 Write the current field values to the given map of name -> value pairs. More...
 
void writeDatas (std::ostream &out, const std::string &separator=" ")
 
BaseDatafindData (const std::string &name) const
 
std::vector< BaseData * > findGlobalField (const std::string &name) const
 Find data fields given a name: several can be found as we look into the alias map. More...
 
BaseLinkfindLink (const std::string &name) const
 
std::vector< BaseLink * > findLinks (const std::string &name) const
 Find link fields given a name: several can be found as we look into the alias map. More...
 
virtual void updateLinks (bool logErrors=true)
 Update pointers in case the pointed-to objects have appeared. More...
 
template<class T >
BaseData::BaseInitData initData (Data< T > *field, const char *name, const char *help, bool isDisplayed=true, bool isReadOnly=false)
 Helper method used to initialize a data field containing a value of type T. More...
 
template<class T >
Data< T >::InitData initData (Data< T > *field, const T &value, const char *name, const char *help, bool isDisplayed=true, bool isReadOnly=false)
 Helper method used to initialize a data field containing a value of type T. More...
 
void addData (BaseData *f, const std::string &name)
 
void addData (BaseData *f)
 
void removeData (BaseData *f)
 Remove a data field. More...
 
void addAlias (BaseData *field, const char *alias)
 Add an alias to a Data. More...
 
void addLink (BaseLink *l)
 Add a link. More...
 
void addAlias (BaseLink *link, const char *alias)
 Add an alias to a Link. More...
 
const VecDatagetDataFields () const
 Accessor to the vector containing all the fields of this object. More...
 
const MapDatagetDataAliases () const
 Accessor to the map containing all the aliases of this object. More...
 
const VecLinkgetLinks () const
 Accessor to the vector containing all the fields of this object. More...
 
const MapLinkgetLinkAliases () const
 Accessor to the map containing all the aliases of this object. More...
 
virtual bool findDataLinkDest (BaseData *&ptr, const std::string &path, const BaseLink *link)
 
template<class T >
bool findLinkDest (T *&ptr, const std::string &path, const BaseLink *link)
 

Additional Inherited Members

- Protected Attributes inherited from sofa::core::DataTrackerDDGNode
DataTracker m_dataTracker
 
- Protected Attributes inherited from sofa::core::objectmodel::DDGNode
DDGLinkContainer inputs
 
DDGLinkContainer outputs
 
- Protected Attributes inherited from sofa::core::objectmodel::BaseObject
SingleLink< BaseObject, BaseContext, BaseLink::FLAG_DOUBLELINKl_context
 
LinkSlaves l_slaves
 
SingleLink< BaseObject, BaseObject, BaseLink::FLAG_DOUBLELINKl_master
 
- Protected Attributes inherited from sofa::core::objectmodel::Base
std::map< std::string, sofa::core::DataTrackerCallbackm_internalEngine
 
VecData m_vecData
 List of fields (Data instances) More...
 
MapData m_aliasData
 name -> Data multi-map (includes names and aliases) More...
 
VecLink m_vecLink
 List of links. More...
 
MapLink m_aliasLink
 name -> Link multi-map (includes names and aliases) More...
 
- Static Public Member Functions inherited from sofa::core::objectmodel::BaseObject
template<class T >
static bool canCreate (T *, BaseContext *, BaseObjectDescription *)
 Pre-construction check method called by ObjectFactory. More...
 
template<class T >
static T::SPtr create (T *, BaseContext *context, BaseObjectDescription *arg)
 Construction method called by ObjectFactory. More...
 
- Static Public Member Functions inherited from sofa::core::objectmodel::Base
static const BaseClassGetClass ()
 
template<class T >
static void dynamicCast (T *&ptr, Base *b)
 
template<class T >
static std::string typeName (const T *ptr=nullptr)
 
template<class T >
static std::string className (const T *ptr=nullptr)
 
template<class T >
static std::string namespaceName (const T *ptr=nullptr)
 
template<class T >
static std::string templateName (const T *ptr=nullptr)
 
template<class T >
static std::string shortName (const T *ptr=nullptr, BaseObjectDescription *=nullptr)
 
- Protected Member Functions inherited from sofa::core::DataEngine
 DataEngine ()
 Constructor. More...
 
 ~DataEngine () override
 Destructor. Do nothing. More...
 
virtual void doInternalUpdate () final
 Prevent engines to use the internalUpdate mechanism, so that only update/doUpdate is used. More...
 
- Protected Member Functions inherited from sofa::core::objectmodel::DDGNode
virtual void doAddInput (DDGNode *n)
 
virtual void doDelInput (DDGNode *n)
 
virtual void doAddOutput (DDGNode *n)
 
virtual void doDelOutput (DDGNode *n)
 
void cleanDirtyOutputsOfInputs (const core::ExecParams *)
 the dirtyOutputs flags of all the inputs will be set to false More...
 
void cleanDirtyOutputsOfInputs ()
 
- Protected Member Functions inherited from sofa::core::objectmodel::BaseObject
 BaseObject ()
 
 ~BaseObject () override
 
virtual void doUpdateInternal ()
 Implementation of the internal update. More...
 
void changeContextLink (BaseContext *before, BaseContext *&after)
 
void changeSlavesLink (BaseObject::SPtr ptr, std::size_t, bool add)
 This method insures that slaves objects have master and context links set correctly. More...
 
void trackInternalData (const BaseData &data)
 Method called to add the Data to the DataTracker (listing the Data to track) More...
 
void cleanTracker ()
 
bool hasDataChanged (const BaseData &data)
 Method called to know if a tracked Data has changed. More...
 
- Protected Member Functions inherited from sofa::core::objectmodel::Base
 Base ()
 
virtual ~Base ()
 
void initData0 (BaseData *field, BaseData::BaseInitData &res, const char *name, const char *help, bool isDisplayed=true, bool isReadOnly=false)
 Helper method used by initData() More...
 
void initData0 (BaseData *field, BaseData::BaseInitData &res, const char *name, const char *help, BaseData::DataFlags dataFlags)
 Helper method used by initData() More...
 
template<class T >
void initData0 (Data< T > *field, typename Data< T >::InitData &res, const T &value, const char *name, const char *help, bool isDisplayed=true, bool isReadOnly=false)
 Helper method used by initData() More...
 

Attribute details

template<class DataTypes >
Data< SeqEdges > sofa::component::engine::MeshSampler< DataTypes >::f_edges

input edges for geodesic sampling

template<class DataTypes >
Data< VecCoord > sofa::component::engine::MeshSampler< DataTypes >::fixedPosition

User defined sample positions.

template<class DataTypes >
Data<unsigned int> sofa::component::engine::MeshSampler< DataTypes >::maxIter

Max number of LLoyd iterations.

template<class DataTypes >
Data<unsigned int> sofa::component::engine::MeshSampler< DataTypes >::number

Sample number.

template<class DataTypes >
Data< VI > sofa::component::engine::MeshSampler< DataTypes >::outputIndices

selected point indices

template<class DataTypes >
Data< VecCoord > sofa::component::engine::MeshSampler< DataTypes >::outputPosition

selected point coordinates

template<class DataTypes >
Data< VecCoord > sofa::component::engine::MeshSampler< DataTypes >::position

input positions

Constructor details

template<class DataTypes >
sofa::component::engine::MeshSampler< DataTypes >::MeshSampler ( )
template<class DataTypes >
sofa::component::engine::MeshSampler< DataTypes >::~MeshSampler ( )
inlineoverride

Function details

template<class DataTypes >
void sofa::component::engine::MeshSampler< DataTypes >::doUpdate ( )
overridevirtual

Where you put your engine's impl.

Implements sofa::core::DataEngine.

template<class DataTypes >
void sofa::component::engine::MeshSampler< DataTypes >::draw ( const core::visual::VisualParams )
overridevirtual

Render internal data of this object, for debugging purposes.

Reimplemented from sofa::core::objectmodel::BaseObject.

template<class DataTypes >
void sofa::component::engine::MeshSampler< DataTypes >::init ( void  )
overridevirtual

Initialization method called at graph creation and modification, during top-down traversal.

Reimplemented from sofa::core::objectmodel::BaseObject.

template<class DataTypes >
void sofa::component::engine::MeshSampler< DataTypes >::reinit ( )
inlineoverridevirtual

Update method called when variables used in precomputation are modified.

Reimplemented from sofa::core::objectmodel::BaseObject.

template<class DataTypes >
sofa::component::engine::MeshSampler< DataTypes >::SOFA_CLASS ( SOFA_TEMPLATE(MeshSampler< DataTypes >, DataTypes)  ,
core::DataEngine   
)