SOFA ewpostek

ewpostek started the topic Missing pybind11Config.cmake in the forum Getting Started 2 weeks ago

Hello,
I took Sofa from git version 21.06.
I built it and installed it.
I follow the page
https://sofapython3.readthedocs.io/en/latest/menu/Compilation.html#prerequisites

I set the paths, etc. I checked the other comments in the forum.
However, I still have an error.

— Found Python: /net/software/local/python/3.7/bin/python3.7 (found suitable…[Read more]
ewpostek started the topic Headers 20.12 vs 21.06 in the forum Building SOFA 2 weeks, 1 day ago

Dear Colleagues,

I build SOFA version 21.06.
I have been doing it with the
version stable and dev.
I took both from github.
When I run cmake I
obtain the comment:
“Using legacy headers is enabled.
Headers from v20.12 are usable, but it is advised to change your code to use the new headers introduced in v21.06.”

Could it disrupt the building…[Read more]
ewpostek replied to the topic gtest.cc in the forum Building SOFA 1 year, 8 months ago

Excuse me, Hugo, if it is useful
I can send the details of the
previous compilation,
Best, Elek
ewpostek replied to the topic gtest.cc in the forum Building SOFA 1 year, 8 months ago

Hi Hugo,
Yes, I have just upgraded gcc.
Best, Elek
ewpostek replied to the topic gtest.cc in the forum Building SOFA 1 year, 8 months ago

Hi Hugo,
I applied gcc 8.3.0.
Even with older boost (to upgrade of course)
it works,
Cheers

cmake
-DBoost_INCLUDE_DIR:PATH=/net/software/local/boost/1.58.0-gcc6.4.0/include
-DPYTHON_EXECUTABLE:FILEPATH=/net/software/local/python/3.6.5/bin/python3
-DCMAKE_CXX_COMPILER:FILEPATH=/net/software/local/gcc/8.3.0/bin/c++…[Read more]
ewpostek started the topic gtest.cc in the forum Building SOFA 1 year, 8 months ago

Dear Colleagues,
I do a built of Sofa with the configuration:
(current version form github,
system: Linux CentOS 7 )
cmake
-DBoost_INCLUDE_DIR:PATH=/net/software/local/boost/1.58.0-gcc6.4.0/include
-DPYTHON_EXECUTABLE:FILEPATH=/net/software/local/python/3.6.5/bin/python3…[Read more]
ewpostek replied to the topic Inserting membrane between two test regions in the forum Using SOFA 4 years, 8 months ago

Hi Hugo,
Thank you for the hint. I will be looking into.
In the meantime, I prepared the geometry of the single composite object, that consists of the nucleus, cytoplasm, outer membrane, membrane that surrounds the nucleus and tendons.

I made it using the gmsh. Since the nonlinear models are not available to the public yet
(you mentioned about…[Read more]
ewpostek replied to the topic Inserting membrane between two test regions in the forum Using SOFA 4 years, 8 months ago

Hi Hugo,
Thank you for the hint. I will be looking into.
In the meantime, I prepared the geometry of
the single composite object, that consists
of the nucleus, cytoplasm, outer membrane,
membrane that surrounds the nucleus and tendons.

I made it using the gmsh.
Since the nonlinear models are not available to the public yet
(you mentioned about…[Read more]
ewpostek started the topic Inserting membrane between two test regions in the forum Using SOFA 4 years, 9 months ago

Hi,

Would you mind to give a hint ?
I have two regions of different stiffness (different E modulus)
discretised with tetrahedrals.
I would like to introduce a membrane between them.
The easiest way to imagine is to look how the
nucleus is covered with the triangles which
is placed in the cytoplasm.
Thank you,
Elek
ewpostek started the topic Inserting membrane between two test regions in the forum Using SOFA 4 years, 9 months ago

Hi,

Would you mind to give a hint ?
I have two regions of different stiffness (different E modulus)
discretised with tetrahedrals.
I would like to introduce a membrane between them.
The easiest way to imagine is to look how the
nucleus is covered with the triangles which
is placed in the cytoplasm.
Thank you,
Elek
ewpostek replied to the topic SOFA STC#3 : raise your expectations! in the forum Announcements / Infos 4 years, 9 months ago

Hi Hugo,
just ensure, of course,
I can share evth.
Best regards, Elek
ewpostek replied to the topic SOFA STC#3 : raise your expectations! in the forum Announcements / Infos 4 years, 9 months ago

Hi Hugo,
Sounds great.
I have the procedures in the programs that are written by myself.
These are f77/f90 procedures.

Now, I still work on the model creation of
several composite cells that are colliding.
My latest thread is “compiling_AdvancedTimer” in the subject.
In fact, these are some problems with ogl.

Cheers,
Elek
ewpostek replied to the topic compiling_AdvancedTimer in the forum Building SOFA 4 years, 9 months ago

Hi,
I think the switches should be for example:

-DGLEW_INCLUDE_DIR:PATH=/usr/include -DGLEW_LIBRARY:FILEPATH=/usr/lib64/libGLEW.so

However, while building without OGL the glew should not be
linked (I believe)

I think there is a kind of conflict.

best, Elek
ewpostek replied to the topic compiling_AdvancedTimer in the forum Building SOFA 4 years, 9 months ago

Hi, thank you, just one remark,
there is no problem with the stable versions,
best, Elek
ewpostek replied to the topic SOFA STC#3 : raise your expectations! in the forum Announcements / Infos 4 years, 9 months ago

Hi,
it would be great to have viscous models,
viscous-elastic (standard solid) and creep (similar to metals,
time hardening, strain hardening).
Perfect, would be to have tendons (with prestressing).

Best regards,
Elek
ewpostek replied to the topic compiling_AdvancedTimer in the forum Building SOFA 4 years, 9 months ago

Hi Maxime,
I repeated the installation of GLEW as you shown, on ubuntu.
Morover, I do compilation on a cluster where the glew is installed
108731:372 usr/lib64/libGLEW.so.1.5.5
108968:0 usr/lib64/libGLEW.so.1.5
However, I still arrive at the same error.

[ 91%] Building CXX object…[Read more]
ewpostek replied to the topic compiling_AdvancedTimer in the forum Building SOFA 4 years, 9 months ago

Hello,
Thank you, yes, it is. I am using 4.8 now.
However, one problem arises.
I build without opengl for batch mode.
However, it appears an error with GLEW,
as follows.
[ 91%] Building CXX object SofaKernel/SofaFramework/framework_test/CMakeFiles/SofaFramework_test.dir/helper/gl/GLSLShader_test.cpp.o In file included from…[Read more]
ewpostek replied to the topic compiling_AdvancedTimer in the forum Building SOFA 4 years, 9 months ago

Hello,
Thank you, yes, it is. I am using 4.8 now.
However, one problem arises.
I build without opengl for batch mode.
However, it appears an error with GLEW,
as follows.

[ 91%] Building CXX object SofaKernel/SofaFramework/framework_test/CMakeFiles/SofaFramework_test.dir/helper/gl/GLSLShader_test.cpp.o
In file included from…[Read more]
ewpostek started the topic compiling_AdvancedTimer in the forum Building SOFA 4 years, 9 months ago

Hello,
I cloned the master-sofa today.
I do compilation (ubuntu 12.04, gcc 3.6, boost 1.48).

I got a problem
[ 4%] Building CXX object SofaKernel/SofaFramework/SofaHelper/CMakeFiles/SofaHelper.dir/AdvancedTimer.cpp.o In file included from…[Read more]
ewpostek started the topic compiling_AdvancedTimer in the forum Building SOFA 4 years, 9 months ago

Hello,
I cloned the master-sofa today.
I do compilation (ubuntu 12.04, gcc 3.6, boost 1.48).

I got a problem
[ 4%] Building CXX object SofaKernel/SofaFramework/SofaHelper/CMakeFiles/SofaHelper.dir/AdvancedTimer.cpp.o
In file included from…[Read more]
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