#include <VoxelGridLoader.h>

Inheritance diagram for sofa::component::io::mesh::VoxelGridLoader:

Public Attributes
Data< type::Vec3 >	voxelSize
	Dimension of one voxel. More...

Data< Vec3i >	dataResolution
	Resolution of the voxel file. More...

Data< Vec6i >	roi
	Region of interest (xmin, ymin, zmin, xmax, ymax, zmax) More...

Data< int >	headerSize
	Header size in bytes. More...

Data< int >	segmentationHeaderSize
	Header size in bytes. More...

Data< type::vector< unsigned int > >	idxInRegularGrid
	indices of the hexa in the grid. More...

Data< type::vector< int > >	backgroundValue
	Background values (to be ignored) More...

Data< type::vector< int > >	activeValue
	Active data values. More...

Data< bool >	generateHexa
	Interpret voxel as either hexa or points. More...

Public Attributes inherited from sofa::core::loader::VoxelLoader
Data< type::vector< sofa::type::Vec3 > >	positions
	Coordinates of the nodes loaded. More...

Data< type::vector< Hexahedron > >	hexahedra
	Hexahedra loaded. More...

Public Attributes inherited from sofa::core::loader::BaseLoader
objectmodel::DataFileName	d_filename

Public Attributes inherited from sofa::core::objectmodel::BaseObject
Data< bool >	f_listening
	if true, handle the events, otherwise ignore the events More...

Public Attributes inherited from sofa::core::objectmodel::Base
std::vector< lifecycle::DeprecatedData * >	m_oldAttributes

Data< int >	d_messageLogCount

Data< std::string >	name
	Name of the object. More...

Data< bool >	f_printLog
	if true, emits extra messages at runtime. More...

Data< sofa::core::objectmodel::TagSet >	f_tags
	list of the subsets the objet belongs to More...

Data< sofa::type::BoundingBox >	f_bbox
	this object bounding box More...

Data< sofa::core::objectmodel::ComponentState >	d_componentState
	the object state More...

std::string	m_definitionSourceFileName {""}

int	m_definitionSourceFilePos {-1}

std::string	m_instanciationSourceFileName {""}

int	m_instanciationSourceFilePos {-1}

Protected Attributes
helper::io::Image *	image

helper::io::Image *	segmentation

int	bpp

Protected Attributes inherited from sofa::core::objectmodel::BaseObject
SingleLink< BaseObject, BaseContext, BaseLink::FLAG_DOUBLELINK >	l_context

LinkSlaves	l_slaves

SingleLink< BaseObject, BaseObject, BaseLink::FLAG_DOUBLELINK >	l_master

Protected Attributes inherited from sofa::core::objectmodel::Base
std::map< std::string, sofa::core::DataTrackerCallback >	m_internalEngine

VecData	m_vecData
	List of fields (Data instances) More...

MapData	m_aliasData
	name -> Data multi-map (includes names and aliases) More...

VecLink	m_vecLink
	List of links. More...

MapLink	m_aliasLink
	name -> Link multi-map (includes names and aliases) More...

Public Member Functions
	SOFA_CLASS (VoxelGridLoader, VoxelLoader)

void	init () override
	Initialization method called at graph creation and modification, during top-down traversal. More...

void	reinit () override
	Update method called when variables used in precomputation are modified. More...

virtual void	clear ()

bool	load () override

bool	canLoad () override

void	setVoxelSize (const type::Vec3 vSize)

type::Vec3	getVoxelSize () const override

void	addBackgroundValue (const int value)

int	getBackgroundValue (const unsigned int idx=0) const

void	addActiveDataValue (const int value)

int	getActiveDataValue (const unsigned int idx=0) const

void	getResolution (Vec3i &res) const

int	getDataSize () const override

unsigned char *	getData () override

unsigned char *	getSegmentID () override

type::vector< unsigned int >	getHexaIndicesInGrid () const override

Vec6i	getROI () const override

void	createSegmentation3DTexture (unsigned char **textureData, int &width, int &height, int &depth) override

Public Member Functions inherited from sofa::core::loader::VoxelLoader
	SOFA_ABSTRACT_CLASS (VoxelLoader, BaseLoader)

void	addHexahedron (type::vector< Hexahedron > *pHexahedra, const type::fixed_array< unsigned int, 8 > &p)

void	addHexahedron (type::vector< Hexahedron > *pHexahedra, unsigned int p0, unsigned int p1, unsigned int p2, unsigned int p3, unsigned int p4, unsigned int p5, unsigned int p6, unsigned int p7)

Public Member Functions inherited from sofa::core::loader::BaseLoader
	SOFA_ABSTRACT_CLASS (BaseLoader, objectmodel::BaseObject)

void	parse (objectmodel::BaseObjectDescription *arg) override
	Parse the given description to assign values to this object's fields and potentially other parameters. More...

void	setFilename (std::string f)

const std::string &	getFilename ()

Public Member Functions inherited from sofa::core::objectmodel::BaseObject
	SOFA_CLASS (BaseObject, Base)

virtual void	draw (const core::visual::VisualParams *)
	Render internal data of this object, for debugging purposes. More...

virtual void	computeBBox (const core::ExecParams *, bool=false)

void	setSrc (const std::string &v, std::vector< std::string > *attributeList=nullptr)
	Sets a source Object and parses it to collect dependent Data. More...

void	setSrc (const std::string &v, const BaseObject loader, std::vector< std::string > attributeList=nullptr)

Base *	findLinkDestClass (const BaseClass destType, const std::string &path, const BaseLink link) override

virtual std::string	getPathName () const override
	Return the full path name of this object. More...

virtual bool	insertInNode (BaseNode *)

virtual bool	removeInNode (BaseNode *)

SReal	getTime () const
	Current time. More...

const BaseContext *	getContext () const

BaseContext *	getContext ()

const BaseObject *	getMaster () const

BaseObject *	getMaster ()

const VecSlaves &	getSlaves () const

BaseObject *	getSlave (const std::string &name) const

virtual void	addSlave (BaseObject::SPtr s)

virtual void	removeSlave (BaseObject::SPtr s)

virtual void	handleEvent (Event *)
	Handle an event. More...

virtual void	handleTopologyChange ()

virtual void	handleTopologyChange (core::topology::Topology *t)

void	parse (BaseObjectDescription *arg) override
	Parse the given description to assign values to this object's fields and potentially other parameters. More...

virtual void	bwdInit ()
	Initialization method called at graph creation and modification, during bottom-up traversal. More...

void	updateInternal ()
	Update method called when variables (used to compute other internal variables) are modified. More...

virtual void	storeResetState ()
	Save the initial state for later uses in reset() More...

virtual void	reset ()
	Reset to initial state. More...

virtual void	cleanup ()

Public Member Functions inherited from sofa::core::objectmodel::Base
virtual const BaseClass *	getClass () const

void	addDeprecatedAttribute (lifecycle::DeprecatedData *attribute)

void	addUpdateCallback (const std::string &name, std::initializer_list< BaseData * > inputs, std::function< sofa::core::objectmodel::ComponentState(const DataTracker &)> function, std::initializer_list< BaseData * > outputs)

void	addOutputsToCallback (const std::string &name, std::initializer_list< BaseData * > outputs)

const std::string &	getName () const
	Accessor to the object name. More...

void	setName (const std::string &n)
	Set the name of this object. More...

void	setName (const std::string &n, int counter)
	Set the name of this object, adding an integer counter. More...

std::string	getTypeName () const
	Get the type name of this object (i.e. class and template types) More...

virtual std::string	getClassName () const
	Get the class name of this object. More...

virtual std::string	getTemplateName () const final
	Get the template type names (if any) used to instantiate this object. More...

std::string	getNameSpaceName () const
	Get the template type names (if any) used to instantiate this object. More...

void	setDefinitionSourceFileName (const std::string &sourceFileName)
	Set the source filename (where the component is implemented) More...

const std::string &	getDefinitionSourceFileName () const
	Get the source filename (where the component is implemented) More...

void	setDefinitionSourceFilePos (const int)
	Set the source location (where the component is implemented) More...

int	getDefinitionSourceFilePos () const
	Get the source location (where the component is implemented) More...

void	setInstanciationSourceFileName (const std::string &sourceFileName)

const std::string &	getInstanciationSourceFileName () const

void	setInstanciationSourceFilePos (const int)

int	getInstanciationSourceFilePos () const

void	addMessage (const sofa::helper::logging::Message &m) const

size_t	countLoggedMessages (sofa::helper::logging::Message::TypeSet t=sofa::helper::logging::Message::AnyTypes) const

const std::deque< sofa::helper::logging::Message > &	getLoggedMessages () const

const std::string	getLoggedMessagesAsString (sofa::helper::logging::Message::TypeSet t=sofa::helper::logging::Message::AnyTypes) const

void	clearLoggedMessages () const

bool	notMuted () const

const sofa::core::objectmodel::TagSet &	getTags () const
	Represents the subsets the object belongs to. More...

bool	hasTag (Tag t) const
	Return true if the object belong to the given subset. More...

void	addTag (Tag t)
	Add a subset qualification to the object. More...

void	removeTag (Tag t)
	Remove a subset qualification to the object. More...

ComponentState	getComponentState () const

bool	isComponentStateValid () const

virtual bool	parseField (const std::string &attribute, const std::string &value)
	Assign one field value (Data or Link) More...

virtual bool	hasField (const std::string &attribute) const
	Check if a given Data field or Link exists. More...

void	parseFields (const std::list< std::string > &str)
	Assign the field values stored in the given list of name + value pairs of strings. More...

virtual void	parseFields (const std::map< std::string, std::string * > &str)
	Assign the field values stored in the given map of name -> value pairs. More...

void	writeDatas (std::map< std::string, std::string * > &str)
	Write the current field values to the given map of name -> value pairs. More...

void	writeDatas (std::ostream &out, const std::string &separator=" ")

BaseData *	findData (const std::string &name) const

std::vector< BaseData * >	findGlobalField (const std::string &name) const
	Find data fields given a name: several can be found as we look into the alias map. More...

BaseLink *	findLink (const std::string &name) const

std::vector< BaseLink * >	findLinks (const std::string &name) const
	Find link fields given a name: several can be found as we look into the alias map. More...

virtual void	updateLinks (bool logErrors=true)
	Update pointers in case the pointed-to objects have appeared. More...

template<class T >
BaseData::BaseInitData	initData (::sofa::core::objectmodel::Data< T > field, const char name, const char *help, ::sofa::core::objectmodel::BaseData::DataFlags dataflags)
	Helper method used to initialize a data field containing a value of type T. More...

template<class T >
BaseData::BaseInitData	initData (Data< T > field, const char name, const char *help, bool isDisplayed=true, bool isReadOnly=false)
	Helper method used to initialize a data field containing a value of type T. More...

template<class T >
Data< T >::InitData	initData (Data< T > field, const T &value, const char name, const char *help, bool isDisplayed=true, bool isReadOnly=false)
	Helper method used to initialize a data field containing a value of type T. More...

void	addData (BaseData *f, const std::string &name)

void	addData (BaseData *f)

void	removeData (BaseData *f)
	Remove a data field. More...

void	addAlias (BaseData field, const char alias)
	Add an alias to a Data. More...

void	addLink (BaseLink *l)
	Add a link. More...

void	addAlias (BaseLink link, const char alias)
	Add an alias to a Link. More...

const VecData &	getDataFields () const
	Accessor to the vector containing all the fields of this object. More...

const MapData &	getDataAliases () const
	Accessor to the map containing all the aliases of this object. More...

const VecLink &	getLinks () const
	Accessor to the vector containing all the fields of this object. More...

const MapLink &	getLinkAliases () const
	Accessor to the map containing all the aliases of this object. More...

virtual bool	findDataLinkDest (BaseData &ptr, const std::string &path, const BaseLink link)

template<class T >
bool	findLinkDest (T &ptr, const std::string &path, const BaseLink link)

Protected Member Functions
	VoxelGridLoader ()

	~VoxelGridLoader () override

Protected Member Functions inherited from sofa::core::loader::VoxelLoader
	VoxelLoader ()

	~VoxelLoader () override

Protected Member Functions inherited from sofa::core::loader::BaseLoader
	BaseLoader ()

	~BaseLoader () override

Protected Member Functions inherited from sofa::core::objectmodel::BaseObject
	BaseObject ()

	~BaseObject () override

virtual void	doUpdateInternal ()
	Implementation of the internal update. More...

void	changeContextLink (BaseContext before, BaseContext &after)

void	changeSlavesLink (BaseObject::SPtr ptr, std::size_t, bool add)
	This method insures that slaves objects have master and context links set correctly. More...

void	trackInternalData (const BaseData &data)
	Method called to add the Data to the DataTracker (listing the Data to track) More...

void	cleanTracker ()

bool	hasDataChanged (const BaseData &data)
	Method called to know if a tracked Data has changed. More...

Protected Member Functions inherited from sofa::core::objectmodel::Base
	Base ()

virtual	~Base ()

void	initData0 (BaseData field, BaseData::BaseInitData &res, const char name, const char *help, bool isDisplayed=true, bool isReadOnly=false)
	Helper method used by initData() More...

void	initData0 (BaseData field, BaseData::BaseInitData &res, const char name, const char *help, BaseData::DataFlags dataFlags)
	Helper method used by initData() More...

template<class T >
void	initData0 (Data< T > field, typename Data< T >::InitData &res, const T &value, const char name, const char *help, bool isDisplayed=true, bool isReadOnly=false)
	Helper method used by initData() More...

Additional Inherited Members
Static Public Member Functions inherited from sofa::core::objectmodel::BaseObject
template<class T >
static bool	canCreate (T , BaseContext , BaseObjectDescription *)
	Pre-construction check method called by ObjectFactory. More...

template<class T >
static T::SPtr	create (T , BaseContext context, BaseObjectDescription *arg)
	Construction method called by ObjectFactory. More...

Static Public Member Functions inherited from sofa::core::objectmodel::Base
static const BaseClass *	GetClass ()

template<class T >
static std::string	shortName (const T ptr=nullptr, BaseObjectDescription =nullptr)

Static Protected Member Functions inherited from sofa::core::loader::BaseLoader
static void	skipToEOL (FILE *f)

static bool	readLine (char buf, int size, FILE f)

Attribute details

◆ activeValue

Data< type::vector<int> > sofa::component::io::mesh::VoxelGridLoader::activeValue

Active data values.

◆ backgroundValue

Data< type::vector<int> > sofa::component::io::mesh::VoxelGridLoader::backgroundValue

Background values (to be ignored)

◆ bpp

int sofa::component::io::mesh::VoxelGridLoader::bpp

protected

◆ dataResolution

Data< Vec3i > sofa::component::io::mesh::VoxelGridLoader::dataResolution

Resolution of the voxel file.

◆ generateHexa

Data<bool> sofa::component::io::mesh::VoxelGridLoader::generateHexa

Interpret voxel as either hexa or points.

◆ headerSize

Data< int > sofa::component::io::mesh::VoxelGridLoader::headerSize

Header size in bytes.

◆ idxInRegularGrid

Data< type::vector<unsigned int> > sofa::component::io::mesh::VoxelGridLoader::idxInRegularGrid

indices of the hexa in the grid.

◆ image

helper::io::Image* sofa::component::io::mesh::VoxelGridLoader::image

protected

◆ roi

Data< Vec6i > sofa::component::io::mesh::VoxelGridLoader::roi

Region of interest (xmin, ymin, zmin, xmax, ymax, zmax)

◆ segmentation

helper::io::Image* sofa::component::io::mesh::VoxelGridLoader::segmentation

protected

◆ segmentationHeaderSize

Data< int > sofa::component::io::mesh::VoxelGridLoader::segmentationHeaderSize

Header size in bytes.

◆ voxelSize

Data< type::Vec3 > sofa::component::io::mesh::VoxelGridLoader::voxelSize

Dimension of one voxel.

Constructor details

◆ VoxelGridLoader()

sofa::component::io::mesh::VoxelGridLoader::VoxelGridLoader ( )

protected

◆ ~VoxelGridLoader()

sofa::component::io::mesh::VoxelGridLoader::~VoxelGridLoader ( )

overrideprotected

Function details

◆ addActiveDataValue()

void sofa::component::io::mesh::VoxelGridLoader::addActiveDataValue ( const int value )

◆ addBackgroundValue()

void sofa::component::io::mesh::VoxelGridLoader::addBackgroundValue ( const int value )

◆ canLoad()

bool sofa::component::io::mesh::VoxelGridLoader::canLoad ( )

overridevirtual

Reimplemented from sofa::core::loader::BaseLoader.

◆ clear()

void sofa::component::io::mesh::VoxelGridLoader::clear ( )

virtual

◆ createSegmentation3DTexture()

void sofa::component::io::mesh::VoxelGridLoader::createSegmentation3DTexture	(	unsigned char **	textureData,
		int &	width,
		int &	height,
		int &	depth
	)

overridevirtual

Implements sofa::core::loader::VoxelLoader.

◆ getActiveDataValue()

int sofa::component::io::mesh::VoxelGridLoader::getActiveDataValue ( const unsigned int idx = 0 ) const

◆ getBackgroundValue()

int sofa::component::io::mesh::VoxelGridLoader::getBackgroundValue ( const unsigned int idx = 0 ) const

◆ getData()

unsigned char * sofa::component::io::mesh::VoxelGridLoader::getData ( )

overridevirtual

Implements sofa::core::loader::VoxelLoader.

◆ getDataSize()

int sofa::component::io::mesh::VoxelGridLoader::getDataSize ( ) const

overridevirtual

Implements sofa::core::loader::VoxelLoader.

◆ getHexaIndicesInGrid()

type::vector< unsigned int > sofa::component::io::mesh::VoxelGridLoader::getHexaIndicesInGrid ( ) const

overridevirtual

Implements sofa::core::loader::VoxelLoader.

◆ getResolution()

void sofa::component::io::mesh::VoxelGridLoader::getResolution ( Vec3i & res ) const

◆ getROI()

VoxelGridLoader::Vec6i sofa::component::io::mesh::VoxelGridLoader::getROI ( ) const

overridevirtual

Implements sofa::core::loader::VoxelLoader.

◆ getSegmentID()

unsigned char * sofa::component::io::mesh::VoxelGridLoader::getSegmentID ( )

overridevirtual

Implements sofa::core::loader::VoxelLoader.

◆ getVoxelSize()

type::Vec3 sofa::component::io::mesh::VoxelGridLoader::getVoxelSize ( ) const

overridevirtual

Implements sofa::core::loader::VoxelLoader.

◆ init()

void sofa::component::io::mesh::VoxelGridLoader::init ( void )

overridevirtual

Initialization method called at graph creation and modification, during top-down traversal.

Reimplemented from sofa::core::objectmodel::BaseObject.

◆ load()

bool sofa::component::io::mesh::VoxelGridLoader::load ( )

overridevirtual

Implements sofa::core::loader::BaseLoader.

◆ reinit()

void sofa::component::io::mesh::VoxelGridLoader::reinit ( )

overridevirtual

Update method called when variables used in precomputation are modified.

Reimplemented from sofa::core::objectmodel::BaseObject.

◆ setVoxelSize()

void sofa::component::io::mesh::VoxelGridLoader::setVoxelSize ( const type::Vec3 vSize )

◆ SOFA_CLASS()

sofa::component::io::mesh::VoxelGridLoader::SOFA_CLASS	(	VoxelGridLoader	,
		VoxelLoader
	)

Public Attributes

Protected Attributes

Public Member Functions

Protected Member Functions

Additional Inherited Members

Attribute details

◆ activeValue

◆ backgroundValue

◆ bpp

◆ dataResolution

◆ generateHexa

◆ headerSize

◆ idxInRegularGrid

◆ image

◆ roi

◆ segmentation

◆ segmentationHeaderSize

◆ voxelSize

Constructor details

◆ VoxelGridLoader()

◆ ~VoxelGridLoader()

Function details

◆ addActiveDataValue()

◆ addBackgroundValue()

◆ canLoad()

◆ clear()

◆ createSegmentation3DTexture()

◆ getActiveDataValue()

◆ getBackgroundValue()

◆ getData()

◆ getDataSize()

◆ getHexaIndicesInGrid()

◆ getResolution()

◆ getROI()

◆ getSegmentID()

◆ getVoxelSize()

◆ init()

◆ load()

◆ reinit()

◆ setVoxelSize()

◆ SOFA_CLASS()